GEPAS

GEPAS : Tools:
GEPAS is the next station in microarray analysis, it is composed of the following interconnected tools :

• Normalization
  DNMAD, Expresso
  
• Preprocessing
  preprocessor, knowledge filering, IDconverter
  
• Clustering
  SOTA, hierachical clustering, k-means, SOM, SOM-Tree, CAAT
  
• Supervised classification
  SVM predictions, Tnasas
  
• Differential expression
  T-Rex (t-test, Bayes, data adaptive, CLEAR, ANOVA, Pearson's test, Spearman's test, regression, survival)
  
• Functional annotation
  FatiGO, FatiGO+, Tissues Mining Tool, MARMITE, FatiScan, GSEA
  
• CGH arrays
  InSilicoArrayCGH
  
• Viewers
  PlotCorr, SotaTree, Tree, CAAT

cat: Bioinformatics, Microarray