index_htmldb: "Oracle by Example - Oracle Database 10g on a Single Instance"
Saturday, April 29, 2006
Easy Web Templates with Oracle JDeveloper 10g
Easy Web Templates with Oracle JDeveloper 10g:
"Easy Web Templates with Oracle JDeveloper 10"
"Easy Web Templates with Oracle JDeveloper 10"
A "How To" article on working with Web templates in JDeveloper 10g
Building an RSS Feed Reader in PL/SQL
AMIS Technology blog » Blog Archive » Building an RSS Feed Reader in PL/SQL - using dbms_xmlparser, dbms_xmldom and dbms_xslprocessor for parsing and transforming:
"This article will demonstrate how we can build an RSS Feed Reader in PL/SQL. We will use DBMS_XMLPARSER to read an RSS feed from an URL and parsethe RSS document, then using the DBMS_XMLDOM package we will analyze the document and then make use of the DBMS_XSLPROCESSOR package to transform the RSS document into a presentable format. "
cat: Oracle, WebDev
"This article will demonstrate how we can build an RSS Feed Reader in PL/SQL. We will use DBMS_XMLPARSER to read an RSS feed from an URL and parsethe RSS document, then using the DBMS_XMLDOM package we will analyze the document and then make use of the DBMS_XSLPROCESSOR package to transform the RSS document into a presentable format. "
cat: Oracle, WebDev
Friday, April 28, 2006
MediaWiki - MediaWiki
MediaWiki - MediaWiki: "MediaWiki is a free software package originally written for Wikipedia but is now run on other projects of the non-profit Wikimedia Foundation and many other wikis."
cat: OpenSource
cat: OpenSource
Thursday, April 27, 2006
Bayesian Analysis of Variance for Microarrays
Bayesian Analysis of Variance for Microarrays: "BAM is a new statistical technique for detecting differentially expressing genes from microarray data. At the heart of the method is a special type of signal detection technique that squashes down false signal while leaving real signal alone. Standard methods look for genes by relying on elementary test statistics using data from one gene at a time (such as t-tests, or contrasts from ANOVA models). Gene lists are obtained by filtering statistics by attempting to control overall type-I error, or false discovery rate, or by filtering using a user specified cutoff level."
AI on the Web
AI on the Web: "This page links to 840 pages around the web with information on Artificial Intelligence. Links in Bold* followed by a star are especially useful and interesting sites. Links with a + sign at the end have 'tooltip' information that will pop up if you put your mouse over the link for a second or two."
Wednesday, April 26, 2006
SQLJ/JDBC Download Page
SQLJ/JDBC Download Page: "JDBC, SQLJ, and Oracle JPublisher"
| Oracle SQLJ Translator and Oracle JPublisher Downloads | |||
 | JPublisher 10g Release 10.2 | ||
| JPublisher 10g Release 10.1.0.3 | ||
| Release 9.2.0.1.0 | ||
| Release 8.1.7.0.0 | ||
JavaScript, Status Bar
How to hide all links status message:
script ---
function hidestatus(){
window.status='Your Text'
return true
}
if (document.layers)
document.captureEvents(Event.MOUSEOVER | Event.MOUSEOUT)
document.onmouseover=hidestatus
document.onmouseout=hidestatus
window.onfocus=hidestatus
document.onmousedown=hidestatus
document.onclick=hidestatus
cat: WebDev
script ---
function hidestatus(){
window.status='Your Text'
return true
}
if (document.layers)
document.captureEvents(Event.MOUSEOVER | Event.MOUSEOUT)
document.onmouseover=hidestatus
document.onmouseout=hidestatus
window.onfocus=hidestatus
document.onmousedown=hidestatus
document.onclick=hidestatus
cat: WebDev
Tuesday, April 25, 2006
XML/BioXML Resources for Databases
XML/BioXML Resources for Databases:
"XML/BioXML Resources for Databases"
"XML/BioXML Resources for Databases"
Here's a listing of some XML documentation that I've been pointed to which may help us begin to grasp what it is for and why it may be important.
- JDOM - The Java Document Model - a Java based solution for accessing, manipulating and outputting XML data
- GAME - Genome Annotation Markup Elements
- An XML Workshop for Biologists and Bioinformaticians by Alan Robinson
- Oracle's information on XML XML Software - XML parsers and DTD Editors galore
- XML Zone - an on-line magazine of sorts for XML developers
- bio.perl.org's XML Project
- Visual Genomics' site - this company has coined BSML - Bioinformatic Sequence Markup Language as well as browsers for using it.
- The BIOpolymer Markup Language (BIOML) Home Page - another company (protometrics) and their standard for 'bioXML'
- IBM's XML Developer site
- Notes on an XML Introduction which I presented on March 1, 2000.
- Vanilla-XML a presentation from IBM descibing XML. Tired of being the only one on your team "in the know" about XML? Download our plain vanilla presentation on XML, customize it for your team, and bring your colleagues -- and especially your boss -- up to speed.
- XML Books some books from amazon.com which may be helpful for the XML-Database crowd.
- w3.org's XML pages
- Sun's JavaDox as a fully searchable XML document
- Catherine Letondal has a web page on biological XML and she also has some info on Bio widgets and other bio-objects here
- XML and Databases by Ronald Bourret, Technical University of Darmstadt. Also includes information on XML-DBMS - a project to transfer data between XML documents and relational databases
- Don't forget to check out CORBA, too!
An XML message broker framework for exchange and integration of microarray data -- Tjandra et al. 19 (14): 1844 -- Bioinformatics
An XML message broker framework for exchange and integration of microarray data -- Tjandra et al. 19 (14): 1844 -- Bioinformatics: "An XML message broker framework for exchange and integration of microarray data"
developed extensible software architecture for retrieving data from different microarray databases using MAGE-ML and for combining microarray data with breast cancer image analysis and clinical data for correlation studies. The framework we developed will provide the necessary data integration to move microarray research from basic biological sciences to clinical applications. Availability: OpenSource software will be available from SourceForge (http://sourceforge.net/projects/microsoap/).
developed extensible software architecture for retrieving data from different microarray databases using MAGE-ML and for combining microarray data with breast cancer image analysis and clinical data for correlation studies. The framework we developed will provide the necessary data integration to move microarray research from basic biological sciences to clinical applications. Availability: OpenSource software will be available from SourceForge (http://sourceforge.net/projects/microsoap/).
XML for Molecular Biology as compiled by Paul Gordon
XML for Molecular Biology as compiled by Paul Gordon: "XML for Molecular Biology as compiled by Paul Gordon"
cat: Bioinformatics
cat: Bioinformatics
JDAS Home
JDAS Home: "JDAS is an OpenSource Java client library for the Distributed Annotation System (DAS). With JDAS, you can easily execute DAS commands against remote DAS servers, and use the response data within your own application. Note that JDAS is not a DAS browser, and does not provide any graphical elements. JDAS aims to be fully compliant with the latest DAS 1.53 Specification (see User Guide for complete details)."
JDAS Features
- Full support for DAS Commands: dsn, dna, sequence, entry_points, types, and features.
- Easy access to the X-Das Status code and detailed error messages.
- Easy access to the X-Das-Capabilities header.
- Console logging feature for viewing all request/response data as it is transmitted over the wire.
- XML validation for all DAS responses, and the ability to programmatically disable XML validation.
- Fully documented API and several example applications to get you started.
XML for Bioinformatics (Springer-Verlag)
XML for Bioinformatics (Springer-Verlag):
"XML for Bioinformatics aims to provide biologists, software engineers, and bioinformatics professionals with a comprehensive introduction to XML and current XML applications in bioinformatics. The book assumes no background in XML, and take readers from basic to intermediate XML concepts. Core topics include: fundamentals of XML, creating XML grammars, web services via SOAP, and parsing XML documents in Perl and Java."
"XML for Bioinformatics aims to provide biologists, software engineers, and bioinformatics professionals with a comprehensive introduction to XML and current XML applications in bioinformatics. The book assumes no background in XML, and take readers from basic to intermediate XML concepts. Core topics include: fundamentals of XML, creating XML grammars, web services via SOAP, and parsing XML documents in Perl and Java."
Monday, April 24, 2006
Oracle Data Mining
Oracle Data Mining: "Oracle Data Mining
Oracle Data Mining (ODM), an option to Oracle Database 10g Enterprise Edition, enables companies to extract information efficiently from the very largest databases and build integrated business intelligence applications. Data analysts can find patterns and insights hidden in their data. Application developers can quickly automate the extraction and distribution of new business intelligence—predictions, patterns and discoveries—throughout the organization.
ODM supports functionality in Oracle Database 10g for the following data mining problems: classification, prediction, regression, clustering, associations, attribute importance, feature extraction and sequence similarity searches and analysis (BLAST). All model-building, scoring, and metadata management operations are accessed via the Oracle Data Mining Client and either a PL/SQL or Java-based API and occur entirely within the relational database."
Oracle Data Mining (ODM), an option to Oracle Database 10g Enterprise Edition, enables companies to extract information efficiently from the very largest databases and build integrated business intelligence applications. Data analysts can find patterns and insights hidden in their data. Application developers can quickly automate the extraction and distribution of new business intelligence—predictions, patterns and discoveries—throughout the organization.
ODM supports functionality in Oracle Database 10g for the following data mining problems: classification, prediction, regression, clustering, associations, attribute importance, feature extraction and sequence similarity searches and analysis (BLAST). All model-building, scoring, and metadata management operations are accessed via the Oracle Data Mining Client and either a PL/SQL or Java-based API and occur entirely within the relational database."
JDeveloper Extensions Exchange
JDeveloper Extensions Exchange: "Oracle JDeveloper 10g 10.1.3 - Extensions Exchange
This page lists extensions for Oracle JDeveloper 10g (10.1.3). These extensions add functionality to Oracle JDeveloper.
Starting with Oracle JDeveloper 10g (10.1.3) many of the extensions are available directly from inside JDeveloper through the 'Help->Check for Update' menu option. "
This page lists extensions for Oracle JDeveloper 10g (10.1.3). These extensions add functionality to Oracle JDeveloper.
Starting with Oracle JDeveloper 10g (10.1.3) many of the extensions are available directly from inside JDeveloper through the 'Help->Check for Update' menu option. "
Saturday, April 22, 2006
Oracle Developer Tools for Visual Studio .NET
Oracle Developer Tools for Visual Studio .NET:
The new Oracle Developer Tools for Visual Studio .NET (ODT) is a tightly integrated 'Add-in' for Microsoft Visual Studio that brings the power of the Oracle Database to .NET developers!
Use the Oracle Explorer to browse your Oracle schema, launch one of the many powerful designers and wizards to create and alter schema objects, and drag and drop schema objects onto your form to automatically generate .NET code."
The new Oracle Developer Tools for Visual Studio .NET (ODT) is a tightly integrated 'Add-in' for Microsoft Visual Studio that brings the power of the Oracle Database to .NET developers!
Use the Oracle Explorer to browse your Oracle schema, launch one of the many powerful designers and wizards to create and alter schema objects, and drag and drop schema objects onto your form to automatically generate .NET code."
And now with ODT 10.2.0.2.10 beta, they've added support for Visual Studio 2005 (Except Express Edition) and include a tightly integrated PL/SQL Debugger.
Using Visual C++ 2005 Express with the Microsoft Platform SDK
Using Visual C++ 2005 Express with the Microsoft Platform SDK: "Using Visual C++ 2005 Express Edition with the Microsoft Platform SDK
By Brian Johnson,
Microsoft Corporation
You can use Visual C++ Express to build powerful .NET Framework applications immediately after installation. In order to use Visual C++ Express to build Win32 applications, you'll need to take just a few more steps. I'll list the steps necessary for building Win32 applications using Visual C++ Express."
By Brian Johnson,
Microsoft Corporation
You can use Visual C++ Express to build powerful .NET Framework applications immediately after installation. In order to use Visual C++ Express to build Win32 applications, you'll need to take just a few more steps. I'll list the steps necessary for building Win32 applications using Visual C++ Express."
ASP.NET QuickStart Tutorial
ASP.NET QuickStart Tutorial: "Visual Web Developer 2005 Express Edition is part of the Microsoft Visual Studio 2005 family, and is the best development tool for building data driven web applications with ASP.NET 2.0. As part of the Express family, Visual Web Developer provides a seamless upgrade path to Visual Studio Standard, Professional, and Team System.
Visual Web Developer is tuned to the specific needs of the Web developer through a new Web profile that exposes a menu and window layout optimized for Web development. The environment includes a best-of-breed HTML source editor, an improved visual page designer, a new project system, better support for working with data, and full XHTML standards support. Collectively, these features enable you to develop data-driven Web applications faster and easier than ever before. Below we'll dive in and explore a few of the many Web development improvements coming with Visual Web Developer."
cat: WebDev
Visual Web Developer is tuned to the specific needs of the Web developer through a new Web profile that exposes a menu and window layout optimized for Web development. The environment includes a best-of-breed HTML source editor, an improved visual page designer, a new project system, better support for working with data, and full XHTML standards support. Collectively, these features enable you to develop data-driven Web applications faster and easier than ever before. Below we'll dive in and explore a few of the many Web development improvements coming with Visual Web Developer."
cat: WebDev
KDevelop - an Integrated Development Environment - Homepage
KDevelop - an Integrated Development Environment - KDevelop: "The KDevelop-Project was founded in 1998 to build up an easy to use IDE (Integrated Development Environment) for KDE. Since then, the KDevelop IDE is publicly available under the GPL and supports many programming languages.
Please contact us for sponsoring or help offers"
Screenshots3.3.x
Please contact us for sponsoring or help offers"
Screenshots3.3.x
Friday, April 21, 2006
Cancer gene search with data-mining and genetic algorithms
Cancer gene search with data-mining and genetic algorithms: "Cancer leads to approximately 25% of all mortalities, making it the second leading cause of death in the United States. Early and accurate detection of cancer is critical to the well being of patients. Analysis of gene expression data leads to cancer identification and classification, which will facilitate proper treatment selection and drug development. Gene expression data sets for ovarian, prostate, and lung cancer were analyzed in this research. An integrated gene-search algorithm for genetic expression data analysis was proposed. This integrated algorithm involves a genetic algorithm and correlation-based heuristics for data preprocessing (on partitioned data sets) and data mining (decision tree and support vector machines algorithms) for making predictions. Knowledge derived by the proposed algorithm has high classification accuracy with the ability to identify the most significant genes. Bagging and stacking algorithms were applied to further enhance the classification accuracy. The results were compared with that reported in the literature. Mapping of genotype information to the phenotype parameters will ultimately reduce the cost and complexity of cancer detection and classification."
cat: Microarray, Bioinformatics
cat: Microarray, Bioinformatics
Geneious
Home | Biomatters: "Geneious puts core bioinformatics functions within the reach of all molecular biologists and biochemists in an application that is as easy to use as email.
Geneious does sequence alignment, 3D structure visualization, phylogenetic tree building, sequence analysis, publication-search and more; all in a single application."
Full NCBI BLAST support was added, including blastn, blastp, tblastn, and tblastx. 3D protein structure visualization was added. Many usability improvements were made, including editable fields. Imports from ClustalW, FASTA, Nexus, and Newick are supported. Storage and full-text searching of PDF documents were implemented. A comprehensive user manual was written.
Geneious does sequence alignment, 3D structure visualization, phylogenetic tree building, sequence analysis, publication-search and more; all in a single application."
Full NCBI BLAST support was added, including blastn, blastp, tblastn, and tblastx. 3D protein structure visualization was added. Many usability improvements were made, including editable fields. Imports from ClustalW, FASTA, Nexus, and Newick are supported. Storage and full-text searching of PDF documents were implemented. A comprehensive user manual was written.
Thursday, April 20, 2006
Data Tables and Cascading Style Sheets Gallery
Data Tables and Cascading Style Sheets Gallery: "CSS Table Gallery"
The CSS Table Gallery is a showcase of how CSS and data tables can work together to create usable and pretty results. Every once in a while there are emails on discussion lists asking for nicely designed tables and they are prone to go off-topic and ending in a holy war why tables are bad and why you shouldn't use them.
cat: WebDev
The CSS Table Gallery is a showcase of how CSS and data tables can work together to create usable and pretty results. Every once in a while there are emails on discussion lists asking for nicely designed tables and they are prone to go off-topic and ending in a holy war why tables are bad and why you shouldn't use them.
cat: WebDev
Wednesday, April 19, 2006
DNA Microarrays (Genome Chips)
DNA Microarrays (Genome Chips) :
"Data Mining: Making Sense of Gene Expression Data"
"Data Mining: Making Sense of Gene Expression Data"
Tuesday, April 18, 2006
Tutorials - Pixel2life.com Tutorial Search Engine
Tutorials - Pixel2life.com Tutorial Search Engine:
"Tutorial Categories"
"Tutorial Categories"
The Dev-C++ Resource Site
The Dev-C++ Resource Site: "Bloodshed Dev-C++ is a full-featured Integrated Development Environment (IDE) for the C/C++ programming language. It uses Mingw port of GCC (GNU Compiler Collection) as its compiler. It creates native Win32 executables, either console or GUI. Dev-C++ can also be used in combination with Cygwin.
Dev-C++ is Free Software (also referred as Open Source), and is written in Delphi (yes I know the irony)."
Cat: WebDev
Dev-C++ is Free Software (also referred as Open Source), and is written in Delphi (yes I know the irony)."
Navigation:
Tutorials: http://www.pixel2life.com/tutorials/Cpp_General/All/Cat: WebDev
Bloodshed Software - Dev-C++
Bloodshed Software - Dev-C++: "Bloodshed Dev-C++ is a full-featured Integrated Development Environment (IDE) for the C/C++ programming language. It uses Mingw port of GCC (GNU Compiler Collection) as it's compiler. Dev-C++ can also be used in combination with Cygwin or any other GCC based compiler.
Features are :
- Support GCC-based compilers
- Integrated debugging (using GDB)
- Project Manager
- Customizable syntax highlighting editor
- Class Browser
- Code Completion
- Function listing
- Profiling support
- Quickly create Windows, console, static libraries and DLLs
- Support of templates for creating your own project types
- Makefile creation
- Edit and compile Resource files
- Tool Manager
- Print support
- Find and replace facilities
- CVS support "
Cat: WebDev
Features are :
- Support GCC-based compilers
- Integrated debugging (using GDB)
- Project Manager
- Customizable syntax highlighting editor
- Class Browser
- Code Completion
- Function listing
- Profiling support
- Quickly create Windows, console, static libraries and DLLs
- Support of templates for creating your own project types
- Makefile creation
- Edit and compile Resource files
- Tool Manager
- Print support
- Find and replace facilities
- CVS support "
Cat: WebDev
Monday, April 17, 2006
GEPAS: Tools
GEPAS: Tools:
GEPAS: a web-based resource for microarray gene expression data analysis
On-line documents
cat: Microarray, Bioinformatics
GEPAS: a web-based resource for microarray gene expression data analysis
On-line documents
cat: Microarray, Bioinformatics
Mentat Technologies :: DreamCoder for Oracle
Mentat Technologies :: DreamCoder for Oracle: "DreamCoder for Oracle is a powerful Integrated Development Environment (IDE) for Oracle Databases. With the intuitive DreamCoder's GUI increase your code quality and reduce the development process time.
DreamCoder for Oracle you will easily be able to build and execute queries, build and execute scripts, compile and debug SQL and PL/SQL code, create and modify database objects, import and export data, user session monitor and database monitor among others.
DreamCoder for Oracle offers powerful visual tools for increase your productivity like SQL editor, procedure builder, master detail table browser, parameter manager, code inspector, describe objects, SQL Formatter, SQL Plus Console, Lov Viewer, object extractor,database reports among others features."
DreamCoder for Oracle you will easily be able to build and execute queries, build and execute scripts, compile and debug SQL and PL/SQL code, create and modify database objects, import and export data, user session monitor and database monitor among others.
DreamCoder for Oracle offers powerful visual tools for increase your productivity like SQL editor, procedure builder, master detail table browser, parameter manager, code inspector, describe objects, SQL Formatter, SQL Plus Console, Lov Viewer, object extractor,database reports among others features."
gotAPI.com :: Reference Lookup Service
gotAPI.com :: Reference Lookup Service:
"Welcome to updated gotAPI.com - Reference Lookup Service."
Cat: WebDev, PHP, JAVA
"Welcome to updated gotAPI.com - Reference Lookup Service."
Cat: WebDev, PHP, JAVA
Flash-Creations.com Notes: An online book for learning Flash and ActionScript
Flash-Creations.com Notes: An online book for learning Flash and ActionScript: "The following is a list of all pages in the Notes section of flash-creations.com, with a keyword description of what's on each page. "
The first 5 sections are introductory Flash material. Following that are Actionscript Basics, Dynamic Content, Server Communications, Classes, AS2 Samples, and older AS1 ASTB Samples.
cat: WebDev
The first 5 sections are introductory Flash material. Following that are Actionscript Basics, Dynamic Content, Server Communications, Classes, AS2 Samples, and older AS1 ASTB Samples.
cat: WebDev
APEX Applications - About
APEX Applications - About: "Oracle Application Express (APEX) is a browser-based web application development tool that runs on top of the Oracle database. Using the tool, it's possible to make robust web applications and export them to share with others. From this site, we hope to allow developers and users alike to collaborate and share as we make a few of these APEX application more and more sophisticated."
For people new to Application Express, know that free accounts are available at apex.oracle.com and more information on the development platform can be found here.
cat: Oracle, WebDev
For people new to Application Express, know that free accounts are available at apex.oracle.com and more information on the development platform can be found here.
cat: Oracle, WebDev
SIMAGE: Simulation of DNA-MicroArray Gene Expression data
SIMAGE: SImulation of DNA-MicroArray Gene Expression data: "SIMAGE: SImulation of DNA MicroArray Gene Expression data"
A model for the simulation of dual-dye cDNA-microarray data closely resembling real data and coin the model and its software implementation SIMAGE which stands for simulation of microarray gene expression data. The software is freely accessible at: http://bioinformatics.biol.rug.nl/websoftware/simage.
A model for the simulation of dual-dye cDNA-microarray data closely resembling real data and coin the model and its software implementation SIMAGE which stands for simulation of microarray gene expression data. The software is freely accessible at: http://bioinformatics.biol.rug.nl/websoftware/simage.
Sunday, April 16, 2006
Wine
Wine is an OpenSource implementation of the Windows API on top of X and Unix.
Think of Wine as a compatibility layer for running Windows programs. Wine does not require Microsoft Windows, as it is a completely free alternative implementation of the Windows API consisting of 100% non-Microsoft code, however Wine can optionally use native Windows DLLs if they are available. Wine provides both a development toolkit for porting Windows source code to Unix as well as a program loader, allowing many unmodified Windows programs to run on x86-based Unixes, including Linux, FreeBSD, and Solaris.
cat:OpenSource , Linux,
Saturday, April 15, 2006
.:: NOTEPAD++ ::.
.:: NOTEPAD++ ::.
Notepad++ is a free source code editor (and Notepad replacement) which supports several programming languages running under the MS Windows environment.
Notepad++ is a free source code editor (and Notepad replacement) which supports several programming languages running under the MS Windows environment.
This project, based on Scintilla edit component (a very powerful editor component) are written in C++ with pure win32 api and STL (that ensures the higher execution speed and smaller size of the program), is under the GPL Licence.
This project is mature. However, as you can see it’s an one-man-project, there’re still some bugs and missing features. If you have any question or suggestion about this project, please post them on the forums. As well, if you have any feature request, you can always do the demand, but there’s no warranty that I’ll implement it.
Friday, April 14, 2006
Integrating Hibernate with JSF in JDeveloper 10.1.3
Integrating Hibernate with JSF in JDeveloper 10.1.3: "Integrating Hibernate with JSF in JDeveloper 10.1.3"
by Deepak Vohra
Download the support files
JBoss Hibernate 2.1.8 production
JBoss Hibernate Extension 2.1.3
Oracle JDeveloper 10g (10.1.3)
Oracle Database 10g
Cat: Oracle , Java , WebDev
by Deepak Vohra
Learn how to create tables and add, retrieve, update, and delete data using the winning combination of Oracle JDeveloper, JBoss Hibernate, and JavaServer Faces (JSF)
Downloads for this article Download the support files JBoss Hibernate 2.1.8 production JBoss Hibernate Extension 2.1.3 Oracle JDeveloper 10g (10.1.3) Oracle Database 10gCat: Oracle , Java , WebDev
hibernate.org - Hibernate
hibernate.org - Hibernate: "Hibernate is a powerful, high performance object/relational persistence and query service. Hibernate lets you develop persistent classes following object-oriented idiom - including association, inheritance, polymorphism, composition, and collections. Hibernate allows you to express queries in its own portable SQL extension (HQL), as well as in native SQL, or with an object-oriented Criteria and Example API.
Unlike many other persistence solutions, Hibernate does not hide the power of SQL from you and guarantees that your investment in relational technology and knowledge is as valid as always. The LGPL open source license allows the use of Hibernate and NHibernate in open source and commercial projects."
Unlike many other persistence solutions, Hibernate does not hide the power of SQL from you and guarantees that your investment in relational technology and knowledge is as valid as always. The LGPL open source license allows the use of Hibernate and NHibernate in open source and commercial projects."
Cat: Oracle, WebDev, OpenSource
Thursday, April 13, 2006
Spring IDE - Trac
Spring IDE - Trac: "Spring IDE is a graphical user interface for the configuration files used by the Spring Framework. It's built as a set of plugins for the Eclipse platform."
PHP Extension for Oracle JDeveloper
PHP Extension for Oracle JDeveloper: "Oracle PHP Extension for Oracle JDeveloper 10g"
Overview
The PHP Extension makes it easy to create, edit, and run PHP scripts in Oracle JDeveloper 10g.
The PHP Extension, combined with JDeveloper's
comprehensive functionality, help make web and database development
productive for the PHP developer.
- PHP, HTML, CSS, XML, Javascript, SQL and PL/SQL support
- Structure view
- Online Help
- Pre-supplied code blocks
- Database connectivity
- PL/SQL debugger
- Database object browser
- Visual database table creation
The PHP Extension can be used in combination with the Application Migration Assistant Extension to migrate non-Oracle based PHP applications to Oracle Database.
Prerequisites
- Oracle JDeveloper 10g 9.0.5.x, 10.1.2 or 10.1.3.
- PHP 4.3.4 or later.
- A web server such as Apache 1.3 or later.
Installation
You can install the 10.1.3 extension using the Update Center in Oracle JDeveloper, or by downloading the extension zip file.
To use the Update Center to install the PHP Extension for 10.1.3
-
Start Oracle JDeveloper 10g 10.1.3.
-
Click Check for Updates on the Help menu. The list of available updates is displayed.
-
Select PHP Extension for Oracle JDeveloper 10g and click Continue.
-
Click Finish. The extension is installed and enabled.
To download and install the PHP Extensions for 10.1.3, 10.1.2 or 9.0.5
- Download the PHP Extension:
- oracle.jdeveloper.php.zip for 10.1.3
- php-addin_1.2.zip for 10.1.2
- php-addin.zip for 9.0.5
-
Extract oracle.jdeveloper.php.10.1.3.10.1.jar from the oracle.jdeveloper.php.zip file to the
/jdev/extensions directory for 10.1.3
or
Extract php-addin.jar from the zip file into the/jdev/lib/ext directory for 10.1.2 or 9.0.5. -
Restart Oracle JDeveloper.
-
Configure 10.1.3, 10.1.2, or 9.0.5, or see the configuration topics of the PHP Extension Online Help.
Quick Outline Navigator for JDeveloper
Quick Outline Navigator for JDeveloper: "Quick Outline Navigator for JDeveloper"
By: John Richardson
Introduction
This extension provides a pop-up that let you easily navigate your code. Just press CTRL+Shift+T and the outline appears listing the components of your code and letting you navigate to them easily.
Instructions
- Invoke via Ctrl+Shift+T or from the menu Navigate->Show Quick Structure
- This brings up a structure view with a limited globular expression filter at the top (supports * wildcard)
- Use up and down arrow keys move selection
- Type in the filter and the tree dynamically changes
- Keystroke 'enter' on a tree node dismisses the window and focuses the editor on that node's code
- Escape dismisses without changes
DHTML Examples
DHTML Examples: "DHTML Examples"
CSS
EVENTS
TEXT
FORMS
IMAGES
WIDOWS
CURSOR
Dynamic Drive.com
DHTML CENTRAL
CSS
EVENTS
TEXT
FORMS
IMAGES
WIDOWS
CURSOR
Dynamic Drive.com
DHTML CENTRAL
Cat: WebDev
Statistical analysis of microarray data
Statistical analysis of microarray data
This web site contains the teaching material for a 3-days course on the statistical analysis of microarray data (well, actually for the time being it only contains the first and third days).
The web course and accompanying material can be retrieved from the following URL.
The course has been conceived for an audience of biologists. The lectures and practicals are organized around conceptual and practical aspects. Mathematical descriptions are avoided, as much as possible, in order to give an intuitive rather than formal presentation of the topics.
Cat: Microarray, Bioinformatics
Wednesday, April 12, 2006
phpPgAdmin :: Web Based PostgreSQL Administration Tool
phpPgAdmin :: Web Based PostgreSQL Administration Tool:
phpPgAdmin is a web-based administration tool for PostgreSQL. It is perfect for PostgreSQL DBAs, newbies and hosting services.
Download latest version: 4.0.1 (28th November 2005)
Features
- Administer multiple servers
- Support for PostgreSQL 7.0.x, 7.1.x, 7.2.x, 7.3.x, 7.4.x, 8.0.x and 8.1.x
- Manage all aspects of:
- Users & groups
- Databases
- Schemas
- Tables, indexes, constraints, triggers, rules & privileges
- Views, sequences & functions
- Advanced objects
- Reports
- Easy data manipulation:
- Browse tables, views & reports
- Execute arbitrary SQL
- Select, insert, update and delete
- Dump table data in a variety of formats: SQL, COPY, XML, XHTML, CSV, Tabbed, pg_dump
- Import SQL scripts, COPY data, XML, CSV and Tabbed
- Supports the Slony master-slave replication engine
- Excellent language support:
- Available in 26 languages
- No encoding conflicts. Edit Russian data using a Japanese interface!
- Easy to install and configure
pgAdmin III: PostgreSQL administration and management tools
pgAdmin III: PostgreSQL administration and management tools: "pgAdmin III is the most popular and feature rich Open Source administration and development platform for PostgreSQL, the most advanced Open Source database in the world. The application may be used on Linux, FreeBSD, Solaris, Mac OSX and Windows platforms to manage PostgreSQL 7.3 and above running on any platform, as well as commercial versions of PostgreSQL"
drupal.org | Community plumbing
drupal.org | Community plumbing: "Drupal.org is the official website of Drupal, an OpenSource content management platform.
Equipped with a powerful blend of features, Drupal can support a variety of websites ranging from personal weblogs to large community-driven websites"
More:
Equipped with a powerful blend of features, Drupal can support a variety of websites ranging from personal weblogs to large community-driven websites"
More:
GOPET: A tool for automated predictions of Gene Ontology terms
GOPET: A tool for automated predictions of Gene Ontology terms: "GOPET: A tool for automated predictions of Gene Ontology terms"
It is now expanded to predict biological process terms. This web service is available via http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar
It is now expanded to predict biological process terms. This web service is available via http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar
Cat: Microarray, Bioinformatics
Oracle XML DB
Oracle XML DB: "Oracle XML DB
Oracle XML DB is a feature of the Oracle Database. It provides a high-performance, native XML storage and retrieval technology. It fully absorbs the W3C XML data model into the Oracle Database, and provides new standard access methods for navigating and querying XML. With Oracle XML DB, you get all the advantages of relational database technology plus the advantages of XML."
Oracle XML DB is a feature of the Oracle Database. It provides a high-performance, native XML storage and retrieval technology. It fully absorbs the W3C XML data model into the Oracle Database, and provides new standard access methods for navigating and querying XML. With Oracle XML DB, you get all the advantages of relational database technology plus the advantages of XML."
Cat: Oracle, WebDev
Extended Colorizer for JDeveloper
Extended Colorizer for JDeveloper: "Extended Colorizer for the Java Code Editor
By: John Richardson
Introduction
This extension adds specific highlighting options for JDeveloper's Java code editor. You can specify highlighting for method definition, method invocation and member variables."
By: John Richardson
Introduction
This extension adds specific highlighting options for JDeveloper's Java code editor. You can specify highlighting for method definition, method invocation and member variables."
Java Pro – The AJAX Approach to Richer Interfaces
Java Pro – The AJAX Approach to Richer Interfaces: "The AJAX Approach to Richer Interfaces
Apply the JSF-component model to encapsulate complex AJAX code into components for simplifying interactive Web applications
by Chris Schalk
April 5, 2006"
Apply the JSF-component model to encapsulate complex AJAX code into components for simplifying interactive Web applications
by Chris Schalk
April 5, 2006"
Download Button
<input
style="padding:5px 2px 5px 2px; font-weight: bold; font-size:94%;"
type="button"
value="Download"
name="button"
onClick="window.location.href=('http://whatever.com/setup.exe')">
style="padding:5px 2px 5px 2px; font-weight: bold; font-size:94%;"
type="button"
value="Download"
name="button"
onClick="window.location.href=('http://whatever.com/setup.exe')">
Free JavaScript DHTML Website Menus, Cross Browser Popup Web Menu
Free JavaScript DHTML Website Menus, Cross Browser Popup Web Menu: "This is Milonic!
Home of the World's most popular JavaScript website navigation systems"
Milonic are World leaders in the development of Dynamic Hypertext Mark-up Language (DHTML) JavaScript and building dynamic, DHTML based web sites. Milonic's flagship product is the DHTML Menu, used by many of the World's largest companies. You can see a very small selection some of our distinguished clients and partners here
Home of the World's most popular JavaScript website navigation systems"
Milonic are World leaders in the development of Dynamic Hypertext Mark-up Language (DHTML) JavaScript and building dynamic, DHTML based web sites. Milonic's flagship product is the DHTML Menu, used by many of the World's largest companies. You can see a very small selection some of our distinguished clients and partners here
Tuesday, April 11, 2006
EclipseZone - Launching SWT Applications Without the Fuss
EclipseZone - Launching SWT Applications Without the Fuss: "The original instructions for running SWT applications outside of Eclipse instruct you to extract the platform-specific SWT libraries into a location where the JVM can find them. You can specify this location explicitly by passing -Djava.library.path= to your java executable. But is there a simpler way that doesn't require the user to perform this 'setup'?
It turns out that all you need to do is load your application using a special class loader that knows how to find SWT libraries and extract them into some temporary location:
"
It turns out that all you need to do is load your application using a special class loader that knows how to find SWT libraries and extract them into some temporary location:
"
MyEclipse J2EE IDE - Easy and affordable eclipse plugin development tools
MyEclipse J2EE IDE - Easy and affordable eclipse plugin development tools:
"MyEclipse Enterprise Workbench 4.1.1"
"MyEclipse Enterprise Workbench 4.1.1"
 | AJAX / WEB 2.0 Tools |
| UML Modeling with full Roundtrip Engineering |
| Split-screen Web Designer for WYSIWYG Development |
| Visual JSF & Struts Development |
| Hibernate Tools - Support Hibernate3 |
| Tapestry and Spring IDE Integration |
| World-class Support Ready for Enterprise Use |
OpenXava
OpenXava: "OpenXava is a framework to develop easily business applications with XML and Java."
OpenXava is an XML/Java Framework to develop J2EE business applications rapidly and easily. It is based on business components defined with XML. It is feature rich and flexible, since it has been used for years to create real business applications.
OpenXava is an XML/Java Framework to develop J2EE business applications rapidly and easily. It is based on business components defined with XML. It is feature rich and flexible, since it has been used for years to create real business applications.
Good PHP Tutorials - SQLZoo
Good PHP Tutorials - SQLZoo
Interactive SQL tutorial, learn about:
Interactive SQL tutorial, learn about:
SQL Server, Oracle, MySQL, DB2, Mimer, PostgreSQL, SQLite and Access.Tutorial Section
- 1) SELECT:
- In which we query the BBC country profile table.
- 2a) More practice with
SELECT: - Additional practice of the basic features using a table of Nobel Prize winners.
- 2b)
SELECTinSELECT: - In which we form queries using other queries.
- 3) SUM and COUNT:
- In which we apply aggregate functions.
- 4) The JOIN operation:
- In which we join two tables; albums and tracks in a music database.
- 5) More JOIN operations:
- In which we join actors to movies in the Movie Database.
- 6) The OUTER JOIN:
- In which we include the parties without people and the people outwith parties in the Scottish Parliament.
- 7) Self join:
- In which we join Edinburgh bus routes to Edinburgh bus routes.
- SQL User Manuals
- [ Mimer | MySQL | Oracle | SQL Server | Access | DB2 | Sybase | Postgres | SQLite ]
- Online copies of implementation specific user manuals.
- Starting SQL
- [
MySQL|Oracle|SQL Server|DB2|Postgres] - How to connect to the server and execute SQL statements.
- Programming with SQL
- [ SQL in perl on the Web | SQL from Java ]
- SQL standard
- [
SQL92 BNF]
DevCentral Home
DevCentral Home: "Popular Articles..."
- Writing Crash-Proof C/C++ Code
- By Christopher McGee
- An Introduction to XSL and XSLT
- By Jeff Volkheimer
- An Introduction to C# GUIs by Example
- By Joey Mingrone
- A Quick Introduction to XML Schemas
- By Jeff Volkheimer
- An Introduction to C#
- By Joey Mingrone
- Introduction to DCOM - Part I
- By Marshall Brain and William Rubin
Microsoft offers tabbed browsing--in IE 6 | CNET News.com
Microsoft offers tabbed browsing--in IE 6 CNET News.com:
"Microsoft offers tabbed browsing--in IE 6"
"Microsoft offers tabbed browsing--in IE 6"
Monday, April 10, 2006
Script and Code Exchange | Oracle FAQ
Script and Code Exchange | Oracle FAQ:
"Script and Code Exchange"
"Script and Code Exchange"
SQL General SQL Scripts
PL/SQL General PL/SQL Scripts
DBA Scripts General DBA Scripts
Object Management Object Management Scripts
Space Management Space Management Scripts
SQL Tuning SQL Performance Tuning Scripts
DB Security Security Auditing Scripts
DB Tuning Database Performance Tuning Scripts
Backup and Recovery Backup and Recovery Scripts
Advanced Replication Advanced Replication Scripts
XML and XMLDB XMLDB and other XML related Scripts
Oracle Text interMedia Text (iMT)/ Context Scripts
Designer Repository Designer Repository Scripts
Developer Forms and Reports Oracle Developer/2000 Forms and Reports
Oracle Applications Oracle Applications Scripts
Perl Perl (Practical Extraction and Report Language) Scripts
AWK AWK Scripts (native to Unix/Linux, download Gawk for Windows)
Pro*C Pro*C Precompiler Programs
SQLJ SQLJ Programs
C and C++ C and C++ Programs
Windows/ DOS MS-Windows CMD and DOS Batch Scripts
Visual Basic VB Programs and VBS Scripts
Unix Shell Unix Shell Scripts
OS/390 (MVS) JCL OS/390 (MVS) JCL Scripts
Add scripts Add your own scripts
Other Sites Other sites with script collections
Oracle Assignment
Oracle Assignment
In PHP versions before 5.0.0 you must use ocilogon() instead of oci_connect().
and uncomment oci....dll in php.ini
Lots of help here: OCI8
In PHP versions before 5.0.0 you must use ocilogon() instead of oci_connect().
and uncomment oci....dll in php.ini
Lots of help here: OCI8
EasyRGB - Color harmonies, complements and themes.
EasyRGB - Color harmonies, complements and themes.: "Search for colors complements to your RGB values.
Create color harmonies, combinations and themes.
From your main (or background) color select trim and accents tones.
"
Create color harmonies, combinations and themes.
From your main (or background) color select trim and accents tones.
"
Sunday, April 09, 2006
ZendCore + Oracle XE on Win2000/XP ...
Discussion Forums : ZendCore + Oracle XE on Win2000/XP ...: "ZendCore + Oracle XE on Win2000/XP "
{From Installation guide)
Supported Web Servers
Apache 1.3.x
Apache 2.0.x (compiled in prefork mode only)
Oracle HTTP Server 10.2.0
Microsoft IIS 5/6
For details download this...
{From Installation guide)
Supported Web Servers
Apache 1.3.x
Apache 2.0.x (compiled in prefork mode only)
Oracle HTTP Server 10.2.0
Microsoft IIS 5/6
For details download this...
HTML DB: How To Integrate Oracle Reports with Oracle HTML DB
HTML DB: How To Integrate Oracle Reports with Oracle HTML DB: "Integrate Oracle Reports with Oracle HTML DB"
Table of Contents
PHP: oci_field_name - Manual
PHP: oci_field_name - Manual: "oci_field_name
(PHP 5)
oci_field_name -- Returns the name of a field from the statement"
(PHP 5)
oci_field_name -- Returns the name of a field from the statement"
DeployPHP Series: Learn to install, configure, and harness the power of your PHP runtime
DeployPHP Series: Learn to install, configure, and harness the power of your PHP runtime: "The DeployPHP Series"
Learn to install, configure, and harness the power of your PHP runtime.
The PHP revolution has finally hit the enterprise: PHP is making an impact on large enterprise developments, and use of this open-source scripting language is expanding to new horizons.
In the Technical Article series The Hitchhiker's Guide to PHP, you got a taste of the PHP language, a look into what the future of that language, and exposure to interesting, real-world experiences involving the use of PHP in large-scale development projects. Equipped with this information, you may have made the choice to use PHP in mainstream projects.
In this multi-part series, OTN—in collaboration with PHP runtime engine company Zend Technologies—provides actionable advice to make PHP deployment a breeze. PHP experts from around the world will share best practices about some of the most critical aspects of PHP application deployment and tuning, from initial configuration, to security, to data layer abstraction. The series caps off with a quick-and-dirty guide to installing and using Zend Core for Oracle, the easy-to-install and supported PHP development and production environment fully integrated with Oracle Database.
Part 1: Top 7 Tips for Optimizing PHP and Oracle
In this first installment of the DeployPHP Series, get a checklist for developing and deploying powerful, scalable PHP applications on Oracle.
by John Lim, creator of phpLens and ADODB
Part 2: Bringing Data Security to PHP Applications
Learn how to build and deploy lightweight PHP front-end applications without compromising the security of your data.
by Mikhail Seliverstov, Programming Team Lead, McGill University
Part 3: Accelerating PHP Code Performance for Oracle
A guide to easy, effective techniques for accelerating your PHP applications.
by Ilia Alshanetsky, Chief Architect, Advanced Internet Designs Inc.
Part 4: Using the PEAR:MDB2 Database Abstraction Layer with Oracle
Get an introduction to the use of the MDB2 database abstraction layer with PHP and Oracle, with simple as well as advanced examples.
by Tobias Schlitt, PEAR Developer and PEAR Core-QA Team Member
Part 5: Zend Core for Oracle Quick Start
Install, deploy, and configure PHP and Oracle using the simplest method available: Zend Core for Oracle.
Matt Kern, Founder of Artisan Technologies and Co-Founder of Atlanta PHP
Saturday, April 08, 2006
a list of bioinformatics courses
a list of bioinformatics courses:
"A LIST OF BIOINFORMATICS COURSES"
"A LIST OF BIOINFORMATICS COURSES"
Java Stored Procedure in Oracle, Database Interaction
Java Stored Procedure in Oracle, Database Interaction:
"Java Stored Procedure in Oracle, Database Interaction "
"Java Stored Procedure in Oracle, Database Interaction "
Joomla Mambo CMS Templates
Joomla Mambo CMS Templates Module Komponenten - Gallery mit über 1000 Templates:
"Templates für Joomla und Mambo 4.5.1 oder höher
598 images in this album on 50 pages"
"Templates für Joomla und Mambo 4.5.1 oder höher
598 images in this album on 50 pages"
Joomla Mambo CMS Templates
Joomla Mambo CMS Templates Module Komponenten - Gallery mit über 1000 Templates:
"Templates für Joomla und Mambo 4.5.1 oder höher
598 images in this album on 50 pages"
"Templates für Joomla und Mambo 4.5.1 oder höher
598 images in this album on 50 pages"
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