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Bioclipse

BioMed Central | Abstract | 1471-2105-8-59 | Bioclipse: An open source workbench for chemo- and bioinformatics: "Bioclipse is an advanced workbench for resources in chemo- and bioinformatics, such as molecules, proteins, sequences, spectra, and scripts. It provides 2D-editing, 3D-visualization, file format conversion, calculation of chemical properties, and much more; all fully integrated into a user-friendly desktop application. Editing supports standard functions such as cut and paste, drag and drop, and undo/redo. Bioclipse is written in Java and based on the Eclipse Rich Client Platform with a state-of-the-art plugin architecture. This gives Bioclipse an advantage over other systems as it can easily be extended with functionality in any desired direction."

IntelliJ IDEA :: The Most Intelligent Java IDE

IntelliJ IDEA :: The Most Intelligent Java IDE: "IntelliJ IDEA is an intelligent Java IDE intensely focused on developer productivity that provides a robust combination of enhanced development tools. Its functionality is continuously extended by the users and third parties. Check out our Companion products or categorized list of more than 300 plugins at the Plugin repository."

AJAX file upload - The Code Project

AJAX file upload
how to implement file uploading method using AJAX and WebService technologies.

MIRA

MIRA: "MIRA 2 - Whole Genome Shotgun and EST Sequence Assembler

The MIRA2 system is the successor of MIRA. Additional years of knowledge and experience were incorporated, new algorithms devised, reliability and execution speed improved. Labs find mira2 useful for assembly of extremely 'unfriendly' projects containing lots of repetitive sequences. The miraEST module is suited for assembly of non-normalised EST projects and for detecting single nucleotide polymorphisms (SNP) in the transcriptome sequences. As always, your mileage may vary."

PostNuke CMS

PostNuke CMS :: A Flexible Open Source Content Management System: "Need a robust, interactive, editable website? PostNuke is your answer, you can have your site up and running within minutes of download!
Features include:

* Modular Structure
* Customized Functionality through Third-Party Modules
* Advanced User Group Permissions System
* Multi-language Support (About 36 Language Packs Available)
* Embedded WYSIWYG HTML Editor Activated
* Site Search
* Advanced API (Application Programming Interface)
* Focused on High Level of Security
* Easy-to-Use Guided Browser Based Installation and more!"

KNIME

KNIME, pronounced [naim], is a modular data exploration platform that enables the user to visually create data flows (often referred to as pipelines), selectively execute some or all analysis steps, and later investigate the results through interactive views on data and models.

KNIME was developed (and will continue to be expanded) by the Chair for Bioinformatics and Information Mining at the University of Konstanz, Germany. The group headed by Michael Berthold is also using KNIME for teaching and research at the University. Quite a number of new data analysis methods developed at the chair are integrated in KNIME. Let us know if you are looking for something in particular, not all of those modules are part of the standard KNIME release just yet...

KNIME base version already incorporates over 100 processing nodes for data I/O, preprocessing and cleansing, modelling, analysis and data mining as well as various interactive views, such as scatter plots, parallel coordinates and others. It includes all analysis modules of the well known Weka data mining environment ( http://www.cs.waikato.ac.nz/ml/weka/) and additional plugins allow R-scripts (www.r-project.org) to be run, offering access to a vast library of statistical routines.

KNIME is based on the Eclipse platform and, through it's modular API, easily extensible. Customs nodes and types can be integrated within hours enabling KNIME to be used not only in production environments but also for teaching and research prototyping. If you would like to read a more detailed description of the software, please download our White Paper as a PDF file here.

KNIME is available through a dual licensing scheme. A non-profit open source license allows KNIME to be downloaded, distributed, and used freely as long as the software or its use is not distributed per profit. See license arrangements for details.

MORFIK

MORFIK: "Morfik WebOS AppsBuilder delivers the next level in the evolution of web-based applications. Unlike existing software development tools, the WebOS AppsBuilder is designed to create truly interactive web applications, not merely text files with tags.

WebOS AppsBuilder brings extreme simplicity to the design of sophisticated AJAX applications without compromising their functionality. You don't need to write any HTML, XHTML, XML, JavaScript or CSS. It has never been easier to create highly interactive web sites and applications - and you don't even have to learn a new language or new technologies to do it!"

PHP for Microsoft AJAX Library

PHP for Microsoft AJAX Library: "A small set of PHP files to support using the Microsoft AJAX Library with PHP web applications. The current release supports creating web service proxies in PHP code such that the Microsoft AJAX Library (a free download from http://ajax.asp.net) can call them from client-side code. Future releases will support localization and globalization, debug and release scripts, and more features inspired by ASP.NET AJAX.
"