ajax: Project jMaki

ajax: Project jMaki: "jMaki is an Ajax framework that provides a lightweight model for reusable Ajax-enabled widgets of your own design or for those extending existing toolkits such as the Dojo toolkit. jMaki facilitates the passing parameters to your widgets and provides the means to better connect your widgets to your server-side resourcess using XML or JSON. Currently the jMaki server-side runtime is provided as a JSP tag library or a JSF component. "

Bioinformatics software - GAAS: Gene Array Analyser Software

Bioinformatics software - GAAS: Gene Array Analyser Software

GAAS is an integrated software framework for efficient management, analysis and visualization of large amounts of gene expression data across replicated experiments. It is structured in management, analysis and visualization sections that allow dealing with several gene expression dataset formats, custom differential expression data analyses, suitable visualization, and storage of results.

The management section is based on a relational database system, allowing handling and analyzing gene expression data generated by different high-throughput array technologies, independently from storage formats. Besides, it ensures management and exportability of result data through custom templates defining formats of output databases where storing analysis results.

In the analysis section several sequential processing steps are performed: background and spot quality evaluation; background correction and data normalization; evaluation of differential gene expression in a single experiment (i.e. test vs. control condition); determination of gene regulation (i.e. significant differential gene expression) across multiple replica experiments.

In the visualization section, a graphical user interface enables to interactively navigate within numerical results of gene differential expressions and their graphical plots.

GAAS is designed for a multi-user environment, enabling each user to store its own parameter values used to perform the analyses, and define data visualization schema and format of the output data.

BioMed Central | Full text | CoXpress: differential co-expression in gene expression data

BioMed Central | Full text | CoXpress: differential co-expression in gene expression data: "CoXpress: differential co-expression in gene expression data"

JUICE - EST Data Management System

JUICE - EST Data Management System: "JUICE: a Data Management System that facilitates the Analysis of Large Volumes of Information in an EST Project Workflow

Expressed sequence tag (EST) analyses provide a rapid and economical means to identify candidate genes that may be involved in a particular biological process. These ESTs are useful in many Functional Genomics studies. However, the large quantity and complexity of the data generated during an EST sequencing project can make the analysis of this information a daunting task."

Official XOOPS Website - Powered by You!

Official XOOPS Website - Powered by You!: "XOOPS is an extensible, OO (Object Oriented), easy to use dynamic web content management system written in PHP. XOOPS is the ideal tool for developing small to large dynamic community websites, intra company portals, corporate portals, weblogs and much more. Read the All about XOOPS page for more details.

If you are looking for XOOPS support in your own language, check out the list of International XOOPS Support websites!"

PHPLiveX -> An Open Source PHP/Ajax Library

PHPLiveX -> An Open Source PHP/Ajax Library

PHPLiveX is a php class library which can be used to call PHP functions from Javascript in Web pages using AJAX. In addition, the class has a flexible preloading property. PHPLiveX is unique with its easy usage.

developerWorks: Ajax how-to articles, tutorials, and community support for developers

developerWorks: Ajax how-to articles, tutorials, and community support for developers: "Ajax resource center"

Check out two exciting resource centers on developerWorks for developers of Web based applications -- the new Ajax (Asynchronous JavaScript and XML) resource center and the PHP resource center.

Get access to the latest technical information on Ajax and PHP technologies, including tools, software downloads, articles, tutorials, events, and documentation. Take advantage of the technical forums and other community tools for information exchange with fellow developers, programmers, and IT architects.

The Ajax resource center helps developers create more interactive Web applications with Ajax technologies. It gathers together technical resources for PHP, ATOM, RSS, Ruby, and Web development frameworks like Spring, Shale, Struts, Rails, and Tapestry.

The PHP project resource center, part of the developerWorks Open source zone, goes in-depth with tutorials and articles on new PHP technologies, including object oriented programming, IDE comparison, debugging techniques, and how-tos on using the latest version of PHP.

RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis -- Hong et al. 22 (22): 2825 -- Bioinformatics

RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis -- Hong et al. 22 (22): 2825 -- Bioinformatics:

Availability: RankProd is available at Bioconductor http://www.bioconductor.org. A web-based interface will soon be available at http://cactus.salk.edu/RankProd

Clearcut: a fast implementation of relaxed neighbor joining -- Sheneman et al. 22 (22): 2823 -- Bioinformatics

Clearcut: a fast implementation of relaxed neighbor joining -- Sheneman et al. 22 (22): 2823 -- Bioinformatics: "Clearcut: a fast implementation of relaxed neighbor joining"
Availability: Clearcut source code is available for download at: http://bioinformatics.hungry.com/clearcut